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	<title>Justin Shenk &#187; Science</title>
	<atom:link href="http://www.jshenk.com/category/research/science/feed/" rel="self" type="application/rss+xml" />
	<link>http://www.jshenk.com</link>
	<description>Biomedical Scientist from San Antonio, Texas</description>
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		<title>Theoretical Biology and Medical Modelling &#124; Full text &#124; A Global Workspace perspective on mental disorders</title>
		<link>http://www.jshenk.com/2010/01/theoretical-biology-and-medical-modelling-full-text-a-global-workspace-perspective-on-mental-disorders/</link>
		<comments>http://www.jshenk.com/2010/01/theoretical-biology-and-medical-modelling-full-text-a-global-workspace-perspective-on-mental-disorders/#comments</comments>
		<pubDate>Tue, 05 Jan 2010 22:43:15 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=338</guid>
		<description><![CDATA[We have begun to outline a consciousness-centered perspective on mental disorders, both those determined by defects in large-scale brain connectivity, and possibly by related failures of embedding goal contexts to constrain the topological dynamics of the global workspace. Further work in this direction might well focus on characterizing specific disorders from this viewpoint, and designing [...]]]></description>
			<content:encoded><![CDATA[<blockquote><p>We have begun to outline a consciousness-centered perspective on mental disorders, both those determined by defects in large-scale brain connectivity, and possibly by related failures of embedding goal contexts to constrain the topological dynamics of the global workspace. Further work in this direction might well focus on characterizing specific disorders from this viewpoint, and designing experiments to test such characterizations.Equation 9 and the arguments surrounding it, however, already provide, in the context of mental disorders, quite a &#8216;hard science&#8217; basis for the evolutionary anthropologist Robert Boyd&#8217;s oft-repeated assertion that &#8220;culture is as much a part of human biology as the enamel on our teeth.&#8221;Not only culture and socioeconomic status, but historical trajectory, power relations between individuals and groups, and the effects of public policy, will write images of themselves onto the fundamental topology of individual consciousness, too frequently defining paths of debilitating developmental disorder which can blight lives.</p></blockquote>
<p>via <a href="http://www.tbiomed.com/content/2/1/49">Theoretical Biology and Medical Modelling | Full text | A Global Workspace perspective on mental disorders</a>, by Rodrick Wallace, <em>Theoretical Biology and Medical Modelling</em> 2005, 			 <strong>2</strong><strong>:</strong>49.</p>
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		<title>Brian J Ford in Who&#8217;s Who in Science in Europe</title>
		<link>http://www.jshenk.com/2009/06/brian-j-ford-in-whos-who-in-science-in-europe/</link>
		<comments>http://www.jshenk.com/2009/06/brian-j-ford-in-whos-who-in-science-in-europe/#comments</comments>
		<pubDate>Wed, 17 Jun 2009 17:08:03 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=291</guid>
		<description><![CDATA[&#8220;I find it easier to write a research paper fore a specialist journal than to translate it into terms that the layman can grasp. But it is an important task. We imagine that we have a gap between scientists on one hand and the public on the other. In fact, the gap is between one [...]]]></description>
			<content:encoded><![CDATA[<blockquote><p>&#8220;I find it easier to write a research paper fore a specialist journal than to translate it into terms that the layman can grasp. But it is an important task. We imagine that we have a gap between scientists on one hand and the public on the other. In fact, the gap is between one specialist and another. It is true that the taxi-driver or the architect may not understand the ramifications of molecular biology, but neither does the astronomer, the hematologist or the nuclear physicist. We need to talk to each other, and to embrace the culture of the public.&#8221;</p></blockquote>
<p>via <a href="http://www.brianjford.com/wsometha.htm">Brian J Ford in Who&#8217;s Who in Science in Europe</a>.</p>
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		<title>Stand up 2 Cancer and the Cancer Prevention and Research Insititute of Texas</title>
		<link>http://www.jshenk.com/2009/06/stand-up-2-cancer-and-the-cancer-prevention-and-research-insititute-of-texas/</link>
		<comments>http://www.jshenk.com/2009/06/stand-up-2-cancer-and-the-cancer-prevention-and-research-insititute-of-texas/#comments</comments>
		<pubDate>Tue, 16 Jun 2009 20:15:10 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[texas]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=287</guid>
		<description><![CDATA[A friend was recently diagnosed with pancreatic cancer. Stand up 2 Cancer is a &#8220;pop&#8221; research funding enterprise (is it cool to be a scientist yet?) &#8211; Link: WELCOME TO SUTV &#124; SU2C. Dream team? Sure sounds like they are having fun.
Also noteworthy is the CPRIT, recently approved by the Texas Legislature ($3 billion over [...]]]></description>
			<content:encoded><![CDATA[<p>A friend was recently diagnosed with pancreatic cancer. Stand up 2 Cancer is a &#8220;pop&#8221; research funding enterprise (is it cool to be a scientist yet?) &#8211; Link: <a href="http://www.standup2cancer.org/sutv?sid=0&amp;vid=917">WELCOME TO SUTV | SU2C</a>. Dream team? Sure sounds like they are having fun.</p>
<p>Also noteworthy is the CPRIT, recently approved by the Texas Legislature ($3 billion over the next 10 years). This will be huge for Texas in developing a cure for cancer and expanding our biotech and life sciences industry. The Chief Scientific Officer is former University of Texas Southwestern Medical School dean and nobel laurete (2004) Alfred G. Gilman, MD, PhD.</p>
<p>Check out their site. &#8211; Link:<a href="http://www.cprit.state.tx.us/"> http://www.cprit.state.tx.us/</a></p>
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		<title>Encouraging science outreach : Abstract : Nature Neuroscience</title>
		<link>http://www.jshenk.com/2009/06/encouraging-science-outreach-abstract-nature-neuroscience/</link>
		<comments>http://www.jshenk.com/2009/06/encouraging-science-outreach-abstract-nature-neuroscience/#comments</comments>
		<pubDate>Mon, 08 Jun 2009 22:21:43 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Community]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[science outreach]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=282</guid>
		<description><![CDATA[Abstract
President Obama recently called for more scientist involvement in education. Science outreach programs are very welcome, but to be effective, they must include incentives for teachers and better training for scientist volunteers.
Link: Encouraging science outreach : Abstract : Nature Neuroscience.
Nature Neuroscience 12, 665 (2009)
doi:10.1038/nn0609-665
]]></description>
			<content:encoded><![CDATA[<blockquote><p>Abstract</p>
<p>President Obama recently called for more scientist involvement in education. Science outreach programs are very welcome, but to be effective, they must include incentives for teachers and better training for scientist volunteers.</p>
<p>Link: <a href="http://www.nature.com/neuro/journal/v12/n6/abs/nn0609-665.html">Encouraging science outreach : Abstract : Nature Neuroscience</a>.</p>
<p id="cite"><span class="journalname">Nature Neuroscience</span> <span class="b">12</span>, 665 (2009)<br />
<span class="doi"><abbr title="Digital Object Identifier">doi</abbr>:10.1038/nn0609-665</span></p></blockquote>
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		<title>The rise of cafe culture : Article : Nature</title>
		<link>http://www.jshenk.com/2009/06/the-rise-of-cafe-culture-article-nature/</link>
		<comments>http://www.jshenk.com/2009/06/the-rise-of-cafe-culture-article-nature/#comments</comments>
		<pubDate>Wed, 03 Jun 2009 19:13:18 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Community]]></category>
		<category><![CDATA[Food]]></category>
		<category><![CDATA[Life]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[science cafe]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=263</guid>
		<description><![CDATA[Two articles about science cafes, written in 2004. These events really are a lot of fun, especially if you were raised on PBS or series like the Cosmos.
A night out in a bar is all the more enjoyable if you can digest some science too. That&#8217;s the lesson of a growing movement whose character may [...]]]></description>
			<content:encoded><![CDATA[<p>Two articles about science cafes, written in 2004. These events really are a lot of fun, especially if you were raised on PBS or series like the Cosmos.</p>
<blockquote><p>A night out in a bar is all the more enjoyable if you can digest some science too. That&#8217;s the lesson of a growing movement whose character may be local but whose reach is potentially global — and at a small cost.</p></blockquote>
<p>via <a href="http://www.nature.com/nature/journal/v429/n6990/full/429327a.html">The rise of cafe culture : Article : Nature</a>.</p>
<blockquote><p>The Denver café, organized by University of Colorado immunologist John Cohen, performs another social function: &#8220;I know that people have got together after meetings,&#8221; he says. &#8220;So when people come in alone, we carefully direct them to potential partners.&#8221;</p></blockquote>
<p>via <a title="Sci Cafe in Nature" href="http://www.nature.com/nature/journal/v429/n6990/full/429333a.html" target="_self">Pop science pulls in public as cafe culture goes global : Article : Nature</a></p>
<p>What&#8217;s next, science hook-ups?</p>
<p>I&#8217;m looking for new venues to host the San Antonio Science Cafe.</p>
<p><a href="http://www.nature.com/nature/journal/v429/n6990/full/429327a.html"><img style="float: right;" src="http://photos3.meetupstatic.com/photos/event/8/8/5/6/global_4114902.jpeg" alt="San Antonio Science Cafe - It's not your grandmother's science cafe." /></a>Previous cafes were at Ruta Maya, which is now closed <img src='http://www.jshenk.com/wp-includes/images/smilies/icon_sad.gif' alt=':(' class='wp-smiley' /> , Old Town Helotes Bar and Grill, and Lion &amp; Rose Pub and Restaurant. Radius Cafe seems cool, if we can coordinate around their choir events during the week.</p>
<p>On another note, Liberty Bar has my favorite Ethiopian coffee and I need to find out what brand it is. Mmm&#8230;</p>
<p><a href="http://www.nature.com/nature/journal/v429/n6990/full/429327a.html"><br />
</a></p>
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		<title>Notes on Psychology</title>
		<link>http://www.jshenk.com/2009/05/notes-on-psychology/</link>
		<comments>http://www.jshenk.com/2009/05/notes-on-psychology/#comments</comments>
		<pubDate>Wed, 13 May 2009 23:21:27 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=242</guid>
		<description><![CDATA[Psychology is such a broad and interesting subject. I wonder how it will integrate with science and technology in the future. Will American society become increasingly individualistic with a fear of domineering social constructs, or will it extend its recent progress in civil liberties to develop a supportive environment for complex and unique personalities and [...]]]></description>
			<content:encoded><![CDATA[<p>Psychology is such a broad and interesting subject. I wonder how it will integrate with science and technology in the future. Will American society become increasingly individualistic with a fear of domineering social constructs, or will it extend its recent progress in civil liberties to develop a supportive environment for complex and unique personalities and individuals?</p>
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- Christopher Lasch</p>
<p>&#8220;The first of these displeasing propositions of psychoanalysis is this: that mental processes are esseentially unconscious. . . . Yet . . . the acceptance of unconscious mental processes represents a decisive step towards a new orientation in the world and in science.&#8221; &#8211; Sigmund Freud</p>
<p>&#8220;Research has shown that fantasy can be rewarding under conditions of physical deprivation. . . . Empirical studies conducted by Silverman, Lachmann, and Milich (1982) showed that the message &#8220;MOMMY AND I ARE ONE&#8221; presented subliminally (on the tachistoscope) ameliorated symptoms in schizophrenic patients in some groups of non-psychotic individuals.<br />
-From &#8220;Fear of Intimacy&#8221; by Firestone and Catlett</p></blockquote>
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		<title>San Antonio Science Cafe Recap</title>
		<link>http://www.jshenk.com/2009/04/san-antonio-science-cafe-recap/</link>
		<comments>http://www.jshenk.com/2009/04/san-antonio-science-cafe-recap/#comments</comments>
		<pubDate>Fri, 03 Apr 2009 22:37:56 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Community]]></category>
		<category><![CDATA[Life]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[San Antonio]]></category>
		<category><![CDATA[science cafe]]></category>
		<category><![CDATA[sigma xi]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=158</guid>
		<description><![CDATA[This month&#8217;s Science Cafe went very well overall. Dr. Miguel Yacaman, Chair of Physics and Astronomy at UTSA introduced the topic of nanotechnology to 25 attendees (mostly from our meetup.com site) for 15 minutes, followed by a 20-minute Q&#38;A session, which was then followed by a break. The Alamo Chapter of Sigma Xi was represented [...]]]></description>
			<content:encoded><![CDATA[<p>This month&#8217;s Science Cafe went very well overall. <a href="http://www.google.com/url?sa=t&amp;source=web&amp;ct=res&amp;cd=1&amp;url=http%3A%2F%2Fen.wikipedia.org%2Fwiki%2FMiguel_Jos%25C3%25A9_Yacam%25C3%25A1n&amp;ei=sxYFSrrNEJixtgegrbWFBw&amp;usg=AFQjCNGxLwgwNuLT4ZXYwycaBbCEK2shNw&amp;sig2=mD22P_-pJ0RenCExW3ulNw" target="_blank">Dr. Miguel Yacaman</a>, Chair of Physics and Astronomy at UTSA introduced the topic of nanotechnology to 25 attendees (mostly from our meetup.com site) for 15 minutes, followed by a 20-minute Q&amp;A session, which was then followed by a break. The Alamo Chapter of Sigma Xi was represented by myself, PA, George Perry and Larry Krock.</p>
<p><object width="288" height="192" data="http://picasaweb.google.com/s/c/bin/slideshow.swf" type="application/x-shockwave-flash"><param name="flashvars" value="host=picasaweb.google.com&amp;RGB=0x000000&amp;feed=http%3A%2F%2Fpicasaweb.google.com%2Fdata%2Ffeed%2Fapi%2Fuser%2Fjcshenk%2Falbumid%2F5320575991903157953%3Fkind%3Dphoto%26alt%3Drss" /><param name="src" value="http://picasaweb.google.com/s/c/bin/slideshow.swf" /></object></p>
<p>The food consisted of 5 party plates (appetizers &#8211; chicken wings, hummus, flaming spears, etc.) at the Lion &amp; Rose. The conference room at the Lion &amp; Rose at Blanco and 410 was an excellent location for future cafes, with a TV with laptop hookup and a mic/audio system. A few people had a little difficulty finding the location because of a poorly placed sign along the access road.</p>
<p>A few notes: The turnout included some motivated individuals who are interested in science outreach to the public. Two are starting a nonprofit aimed at funding science blogs and other activities, and one has volunteered to assist in organizing similar meetings for scientific conversation without invited experts. This would keep our audience interested in between bi-mothly (or however frequent) Science Cafes. Also, I found that the breaks provided the greatest opportunity for people to mingle and open up. Perhaps next time we will have a break before a second round of open discussion with the speaker. Also, the seating there was limited to 35, which is fine for intimate meetings (which may be best) but would not be appropriate for a media blitzkrieg of the local press. Overall, I believe these meetings serve many purposes of the Alamo Chapter of Sigma Xi, especially outreach and promotion of our presence in San Antonio.</p>
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		<title>Job Swap: This Robot Is the Scientist &#124; LiveScience</title>
		<link>http://www.jshenk.com/2009/04/job-swap-this-robot-is-the-scientist-livescience/</link>
		<comments>http://www.jshenk.com/2009/04/job-swap-this-robot-is-the-scientist-livescience/#comments</comments>
		<pubDate>Fri, 03 Apr 2009 15:51:20 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Research]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=152</guid>
		<description><![CDATA[Aberystwyth University replaces lab techs with robots. Skynet Goes Online.
Check out this article &#8211; Job Swap: This Robot Is the Scientist &#124; LiveScience.
]]></description>
			<content:encoded><![CDATA[<p>Aberystwyth University replaces lab techs with robots. Skynet Goes Online.</p>
<p>Check out this article &#8211; <a href="http://www.livescience.com/technology/090402-robot-scientist.html">Job Swap: This Robot Is the Scientist | LiveScience</a>.</p>
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		<title>Stuff: Quantifying western blots without expensive commercial quantification software.</title>
		<link>http://www.jshenk.com/2009/04/stuff-quantifying-western-blots-without-expensive-commercial-quantification-software/</link>
		<comments>http://www.jshenk.com/2009/04/stuff-quantifying-western-blots-without-expensive-commercial-quantification-software/#comments</comments>
		<pubDate>Thu, 02 Apr 2009 21:22:38 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Research]]></category>
		<category><![CDATA[Science]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/?p=146</guid>
		<description><![CDATA[I came across a very handy overview of western blot quantitative analysis using ImageJ:
Stuff: Quantifying western blots without expensive commercial quantification software.
We have reprobed our samples for actin and are trying to compare relative intensities, despite differences in exposures.
]]></description>
			<content:encoded><![CDATA[<p>I came across a very handy overview of western blot quantitative analysis using ImageJ:</p>
<p><a href="http://www.lukemiller.org/journal/2007/08/quantifying-western-blots-without.html">Stuff: Quantifying western blots without expensive commercial quantification software.</a></p>
<p>We have reprobed our samples for actin and are trying to compare relative intensities, despite differences in exposures.</p>
]]></content:encoded>
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		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Nuclear Binding Energy</title>
		<link>http://www.jshenk.com/2009/03/nuclear-binding-energy/</link>
		<comments>http://www.jshenk.com/2009/03/nuclear-binding-energy/#comments</comments>
		<pubDate>Tue, 31 Mar 2009 14:26:03 +0000</pubDate>
		<dc:creator>Justin</dc:creator>
				<category><![CDATA[Science]]></category>
		<category><![CDATA[Physics]]></category>
		<category><![CDATA[Study]]></category>

		<guid isPermaLink="false">http://www.jshenk.com/2009/03/nuclear-binding-energy/</guid>
		<description><![CDATA[Nucleons bind to form a nucleus, and some mass is converted to energy, so the mass of the combined nucleus is less than the sum of masses of all nucleons individually.  This delta m is known as mass defect. This nuclear binding energy can be found from Einstein&#8217;s equation for mass-energy equivalence, E = [...]]]></description>
			<content:encoded><![CDATA[<p>Nucleons bind to form a nucleus, and some mass is converted to energy, so the mass of the combined nucleus is less than the sum of masses of all nucleons individually.  This delta m is known as mass defect. This nuclear binding energy can be found from Einstein&#8217;s equation for mass-energy equivalence, E = delta m (c*c), where delta m represents the mass defect.</p>
]]></content:encoded>
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		<slash:comments>0</slash:comments>
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